R's bump in Q1Y14 is probably when CRAN, R's largest "official" repo archive pushed all of its packages to Github. Pretty neat to see the volume right there.
I think there's steady growth in active R repos that's masked by the huge impact of Hopkin's Coursera course on reproducible research. Tens of thousands of people fork a repo for a homework (https://github.com/search?q=forks%3A%3E30000&type=Repositori...), and then never touch it again
Part of that is the fact that many R packages are actually predominantly written in C++, C, Java, etc..., so they show up in Github searches as being written in a language other than R...